Changelog
=========

This document tracks all notable changes to PICASSO. The format is based on `Keep a Changelog <https://keepachangelog.com/en/1.0.0/>`_, and this project adheres to `Semantic Versioning <https://semver.org/spec/v2.0.0.html>`_.

For the most up-to-date changelog, see the `CHANGELOG.md <https://github.com/yourusername/picasso/blob/main/CHANGELOG.md>`_ file in the repository.

Version History
---------------

**v1.0.0** - Initial Release

- Complete phylogenetic inference algorithm for scRNA-seq-inferred CNA data
- Noise-aware termination criteria with confidence thresholds
- CloneTree class for advanced phylogenetic analysis
- iTOL visualization export utilities  
- Comprehensive documentation and examples
- Support for Python 3.10+